Trans-meQTLs across different cancer types

In trans-meQTL analyses, we identified 965,050 trans-meQTLs at FDR < 0.05 and |r|>=0.3 in 23 cancer types for users to search or browse.

     

e.g., "BLCA"
e.g., "rs4975682"
e.g., "cg25599786"
e.g., "PDCD6"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Methylation probe
Methylation position (hg19)
Gene symbol
Beta
t-stat
r
p-valule
Display
BLCA rs375397731 chr11:50259010 TTTTC/T cg15704280 chr7:45808275 SEPT13 -1.02 -24.34 -0.78 1.55E-79 Box Plot
BLCA rs3780489 chr9:33129844 G/T cg04842962 chr6:43655489 MRPS18A 1.05 26.78 0.81 1.58E-89 Box Plot
BLCA rs3780489 chr9:33129844 G/T cg20290983 chr6:43655470 MRPS18A 1.05 26.86 0.81 7.82E-90 Box Plot
BLCA rs3780490 chr9:33129839 A/G cg04842962 chr6:43655489 MRPS18A 1.05 26.78 0.81 1.58E-89 Box Plot
BLCA rs3780490 chr9:33129839 A/G cg20290983 chr6:43655470 MRPS18A 1.05 26.86 0.81 7.82E-90 Box Plot
BLCA rs3792282 chr3:125736204 C/T cg26321609 chr3:123680480 CCDC14 -1.17 -26.54 -0.81 1.53E-88 Box Plot
BLCA rs3792283 chr3:125736338 G/C cg26321609 chr3:123680480 CCDC14 -1.13 -25.06 -0.79 1.66E-82 Box Plot
BLCA rs3796165 chr3:125703793 G/A cg26321609 chr3:123680480 CCDC14 -1.18 -24.45 -0.78 5.54E-80 Box Plot
BLCA rs3804586 chr3:125732531 G/T cg26321609 chr3:123680480 CCDC14 -1.17 -26.04 -0.8 1.66E-86 Box Plot
BLCA rs3804587 chr3:125737621 C/T cg26321609 chr3:123680480 CCDC14 -1.18 -27.45 -0.82 3.23E-92 Box Plot
BLCA rs3817079 chr3:125741592 C/T cg26321609 chr3:123680480 CCDC14 -1.13 -25.27 -0.79 2.24E-83 Box Plot
BLCA rs3846804 chr6:66806084 G/A cg15611600 chr13:45563400 KIAA1704;NUFIP1 -1.07 -24.46 -0.78 4.98E-80 Box Plot
BLCA rs3850449 chr11:50300630 G/A cg15704280 chr7:45808275 SEPT13 -1.03 -24.12 -0.78 1.22E-78 Box Plot
BLCA rs3853433 chr11:50380833 C/T cg15704280 chr7:45808275 SEPT13 -1.03 -24.77 -0.79 2.56E-81 Box Plot
BLCA rs3903670 chr6:66812183 T/C cg15611600 chr13:45563400 KIAA1704;NUFIP1 -1.07 -24.55 -0.78 2.08E-80 Box Plot